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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
Anticodon table
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
Number of tRNA genes
T
C
A
G
T
phe
AAA
0
Ser
AGA
0
Tyr
ATA
0
Cys
ACA
0
T
GAA
4
GGA
14
GTA
3
GCA
12
C
Leu
TAA
11
TGA
14
ochre
TTA
0
opal Sec
TCA
1
A
CAA
5
CGA
11
amber
CTA
0
Trp
CCA
8
G
C
Leu
AAG
1
Pro
AGG
0
His
ATG
0
Arg
ACG
7
T
GAG
10
GGG
8
GTG
9
GCG
4
C
TAG
11
TGG
5
Gln
TTG
10
TCG
5
A
CAG
6
CGG
7
CTG
8
CCG
6
G
A
Ile
AAT
0
Thr
AGT
0
Asn
ATT
0
Ser
ACT
1
T
GAT
12
GGT
5
GTT
4
GCT
13
C
TAT
1
TGT
6
Lys
TTT
5
Arg
TCT
6
A
Met
CAT
29
CGT
7
CTT
12
CCT
8
G
G
Val
AAC
0
Ala
AGC
0
Asp
ATC
0
Gly
ACC
0
T
GAC
5
GGC
8
GTC
4
GCC
13
C
TAC
6
TGC
14
Glu
TTC
7
TCC
10
A
CAC
8
CGC
8
CTC
6
CCC
8
G
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