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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
Anticodon table
[CEQC] marine metagenome genome assembly TARA_076_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
Number of tRNA genes
T
C
A
G
T
phe
AAA
0
Ser
AGA
0
Tyr
ATA
0
Cys
ACA
0
T
GAA
7
GGA
5
GTA
10
GCA
17
C
Leu
TAA
24
TGA
9
ochre
TTA
0
opal Sec
TCA
0
A
CAA
5
CGA
6
amber
CTA
0
Trp
CCA
7
G
C
Leu
AAG
0
Pro
AGG
0
His
ATG
0
Arg
ACG
11
T
GAG
7
GGG
5
GTG
12
GCG
0
C
TAG
9
TGG
7
Gln
TTG
12
TCG
2
A
CAG
6
CGG
6
CTG
6
CCG
6
G
A
Ile
AAT
0
Thr
AGT
0
Asn
ATT
0
Ser
ACT
0
T
GAT
3
GGT
8
GTT
16
GCT
8
C
TAT
5
TGT
20
Lys
TTT
9
Arg
TCT
30
A
Met
CAT
26
CGT
7
CTT
4
CCT
6
G
G
Val
AAC
0
Ala
AGC
0
Asp
ATC
0
Gly
ACC
1
T
GAC
7
GGC
5
GTC
7
GCC
7
C
TAC
10
TGC
14
Glu
TTC
16
TCC
9
A
CAC
8
CGC
2
CTC
1
CCC
10
G
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