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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
Anticodon table
[FRDC] freshwater metagenome; water
Number of tRNA genes
T
C
A
G
T
phe
AAA
0
Ser
AGA
0
Tyr
ATA
0
Cys
ACA
0
T
GAA
24
GGA
23
GTA
23
GCA
32
C
Leu
TAA
43
TGA
24
ochre
TTA
0
opal Sec
TCA
2
A
CAA
33
CGA
22
amber
CTA
8
Trp
CCA
33
G
C
Leu
AAG
0
Pro
AGG
1
His
ATG
0
Arg
ACG
31
T
GAG
23
GGG
23
GTG
28
GCG
2
C
TAG
39
TGG
50
Gln
TTG
37
TCG
13
A
CAG
21
CGG
16
CTG
22
CCG
14
G
A
Ile
AAT
0
Thr
AGT
0
Asn
ATT
0
Ser
ACT
0
T
GAT
25
GGT
20
GTT
34
GCT
31
C
TAT
10
TGT
33
Lys
TTT
33
Arg
TCT
37
A
Met
CAT
95
CGT
25
CTT
18
CCT
24
G
G
Val
AAC
0
Ala
AGC
0
Asp
ATC
0
Gly
ACC
0
T
GAC
24
GGC
18
GTC
28
GCC
25
C
TAC
28
TGC
21
Glu
TTC
28
TCC
31
A
CAC
16
CGC
15
CTC
22
CCC
16
G
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