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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
Anticodon table
[PJTT] soil metagenome; Soil (2) enriched on wood chips
Number of tRNA genes
T
C
A
G
T
phe
AAA
0
Ser
AGA
0
Tyr
ATA
0
Cys
ACA
0
T
GAA
15
GGA
11
GTA
9
GCA
11
C
Leu
TAA
11
TGA
14
ochre
TTA
0
opal Sec
TCA
0
A
CAA
9
CGA
6
amber
CTA
0
Trp
CCA
12
G
C
Leu
AAG
0
Pro
AGG
0
His
ATG
0
Arg
ACG
9
T
GAG
11
GGG
9
GTG
11
GCG
0
C
TAG
11
TGG
14
Gln
TTG
13
TCG
1
A
CAG
11
CGG
5
CTG
4
CCG
8
G
A
Ile
AAT
0
Thr
AGT
0
Asn
ATT
0
Ser
ACT
0
T
GAT
1
GGT
8
GTT
14
GCT
9
C
TAT
0
TGT
15
Lys
TTT
13
Arg
TCT
10
A
Met
CAT
35
CGT
5
CTT
10
CCT
10
G
G
Val
AAC
0
Ala
AGC
0
Asp
ATC
0
Gly
ACC
1
T
GAC
9
GGC
15
GTC
22
GCC
15
C
TAC
13
TGC
2
Glu
TTC
20
TCC
7
A
CAC
5
CGC
3
CTC
3
CCC
7
G
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