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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
Anticodon table
Compost metagenome contig00001
Number of tRNA genes
T
C
A
G
T
phe
AAA
0
Ser
AGA
0
Tyr
ATA
0
Cys
ACA
0
T
GAA
18
GGA
15
GTA
34
GCA
27
C
Leu
TAA
16
TGA
28
ochre
TTA
0
opal Sec
TCA
3
A
CAA
28
CGA
11
amber
CTA
0
Trp
CCA
15
G
C
Leu
AAG
0
Pro
AGG
0
His
ATG
0
Arg
ACG
17
T
GAG
17
GGG
18
GTG
26
GCG
4
C
TAG
20
TGG
22
Gln
TTG
30
TCG
10
A
CAG
19
CGG
26
CTG
16
CCG
19
G
A
Ile
AAT
0
Thr
AGT
0
Asn
ATT
0
Ser
ACT
0
T
GAT
25
GGT
22
GTT
27
GCT
27
C
TAT
0
TGT
23
Lys
TTT
19
Arg
TCT
24
A
Met
CAT
69
CGT
15
CTT
22
CCT
21
G
G
Val
AAC
0
Ala
AGC
0
Asp
ATC
0
Gly
ACC
0
T
GAC
15
GGC
16
GTC
22
GCC
26
C
TAC
20
TGC
25
Glu
TTC
26
TCC
34
A
CAC
10
CGC
12
CTC
13
CCC
16
G
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