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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
Anticodon table
metagenomic water samples (SRP000427)
Number of tRNA genes
T
C
A
G
T
phe
AAA
0
Ser
AGA
0
Tyr
ATA
0
Cys
ACA
0
T
GAA
34
GGA
13
GTA
30
GCA
36
C
Leu
TAA
47
TGA
39
ochre
TTA
0
opal Sec
TCA
3
A
CAA
18
CGA
6
amber
CTA
1
Trp
CCA
17
G
C
Leu
AAG
0
Pro
AGG
0
His
ATG
0
Arg
ACG
27
T
GAG
10
GGG
13
GTG
13
GCG
2
C
TAG
26
TGG
30
Gln
TTG
25
TCG
7
A
CAG
22
CGG
6
CTG
6
CCG
13
G
A
Ile
AAT
0
Thr
AGT
0
Asn
ATT
0
Ser
ACT
1
T
GAT
49
GGT
26
GTT
57
GCT
11
C
TAT
7
TGT
41
Lys
TTT
40
Arg
TCT
42
A
Met
CAT
61
CGT
17
CTT
4
CCT
11
G
G
Val
AAC
0
Ala
AGC
0
Asp
ATC
0
Gly
ACC
1
T
GAC
16
GGC
10
GTC
54
GCC
38
C
TAC
28
TGC
39
Glu
TTC
40
TCC
28
A
CAC
3
CGC
1
CTC
1
CCC
5
G
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