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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
Identical Sequence Group
Metagenomic characterization of a wastewater treatment plant (SRP000180)
[ 100 % / outside this phylotype ]
Number of tRNA clusters
T
C
A
G
T
phe
AAA
0
Ser
AGA
0
Tyr
ATA
0
Cys
ACA
0
T
GAA
13
GGA
6
GTA
9
GCA
3
C
Leu
TAA
5
TGA
4
ochre
TTA
0
opal Sec
TCA
0
A
CAA
4
CGA
1
amber
CTA
1
Trp
CCA
9
G
C
Leu
AAG
0
Pro
AGG
0
His
ATG
0
Arg
ACG
5
T
GAG
4
GGG
5
GTG
8
GCG
0
C
TAG
4
TGG
6
Gln
TTG
9
TCG
1
A
CAG
2
CGG
6
CTG
2
CCG
6
G
A
Ile
AAT
0
Thr
AGT
0
Asn
ATT
0
Ser
ACT
0
T
GAT
10
GGT
6
GTT
7
GCT
8
C
TAT
0
TGT
8
Lys
TTT
6
Arg
TCT
8
A
Met
CAT
23
CGT
9
CTT
6
CCT
3
G
G
Val
AAC
0
Ala
AGC
0
Asp
ATC
0
Gly
ACC
0
T
GAC
6
GGC
4
GTC
16
GCC
7
C
TAC
7
TGC
12
Glu
TTC
7
TCC
7
A
CAC
2
CGC
2
CTC
1
CCC
7
G
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