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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
Identical Sequence Group
metagenomic water samples (SRP000427)
[ 100 % / outside this phylotype ]
Number of tRNA clusters
T
C
A
G
T
phe
AAA
0
Ser
AGA
0
Tyr
ATA
0
Cys
ACA
0
T
GAA
15
GGA
6
GTA
7
GCA
7
C
Leu
TAA
10
TGA
10
ochre
TTA
0
opal Sec
TCA
2
A
CAA
5
CGA
4
amber
CTA
1
Trp
CCA
6
G
C
Leu
AAG
0
Pro
AGG
0
His
ATG
0
Arg
ACG
7
T
GAG
6
GGG
5
GTG
5
GCG
0
C
TAG
5
TGG
8
Gln
TTG
10
TCG
2
A
CAG
8
CGG
1
CTG
1
CCG
6
G
A
Ile
AAT
0
Thr
AGT
0
Asn
ATT
0
Ser
ACT
0
T
GAT
13
GGT
11
GTT
13
GCT
5
C
TAT
1
TGT
12
Lys
TTT
7
Arg
TCT
11
A
Met
CAT
23
CGT
1
CTT
2
CCT
5
G
G
Val
AAC
0
Ala
AGC
0
Asp
ATC
0
Gly
ACC
0
T
GAC
11
GGC
5
GTC
14
GCC
7
C
TAC
10
TGC
14
Glu
TTC
10
TCC
7
A
CAC
1
CGC
0
CTC
0
CCC
4
G
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