The detailed information of tRNA gene sequence


Sequence ID>W1711421182
Genome IDMHYC01000021
Search identical group
Phylum/ClassPlanctomycetota
SpeciesPlanctomycetes bacterium RBG_13_44_8b [MHYC]
Start position on genome 42294
End posion on genome 42200
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
aagaatagat
tRNA gene sequence 
GGAGGTGACAGGTGCCTGGTGGTGCTCCTGGTCTTCAAAACCAGTGCAGGGCCGATAAGG
TCCTGGGTGGGTTCGATTCCCATTCGCCTCCGCCA
Downstream region at tRNA end position 
tttttagctg
Secondary structure (Cloverleaf model)
>W1711421182	SeC(p)	TCA
                   t      GCCA tttttagctg
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     T + G
                     G - C
                     A - T          T T
                    C     T A C C C     A
      T C C        A      + | | | |     G
    G       G T G G       G T G G G     C
    G       + + | +                 T T
    T       T G C T
      G G          C     TGCAGGGCCGATAAGGTCCTGG
                    C - G
                    T - A
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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