The detailed information of tRNA gene sequence


Sequence ID>W1711425067
Genome IDMIEP01000004
Search identical group
Phylum/ClassMycoplasmatota
SpeciesRice orange leaf phytoplasma [MIEP]
Start position on genome 132414
End posion on genome 132505
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
atataattta
tRNA gene sequence 
GGAGTAGTACTCAAGTGGCTATAAGAGGCGTCCCTGCTAAGGACGTAGTCCGAGAAATCG
GTGCAAGGGTTCGAATCCCTTCTGCTCCGCCA
Downstream region at tRNA end position 
ttttgaattt
Secondary structure (Cloverleaf model)
>W1711425067	Ser	GCT
                   a      GCCA ttttgaattt
                     G - C
                     G - C
                     A - T
                     G - C
                     T + G
                     A - T
                     G - C          T A
                    T     T T C C C     A
    G T G A        A      | | | | |     G
  G         A C T C       A A G G G     C
  C           | | |                 T T
  T         A G A G
    A T A          G     TAGTCCGAGAAATCGGTGC
                    C - G
                    G - C
                    T - A
                    C - G
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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