The detailed information of tRNA gene sequence


Sequence ID>PL171001180
Genome IDCP015881
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesEnsifer adhaerens Casida A plasmid:pCasidaAA
Start position on genome 106704
End posion on genome 106608
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
tcagcgctgA
tRNA gene sequence 
GGAAGGGAATCGTCTCCGGTGGGACGGCCGGACTTCAAATCCGGTTGGGGCAGCGAGCCT
GTCCCGGGTGGGTTCGACCCCCACTCCCCTCCGCC
Downstream region at tRNA end position 
Agcgctcacg
Secondary structure (Cloverleaf model)
>PL171001180	SeC(p)	TCA
                   A      CGCC Agcgctcacg
                     G - C
                     G + T
                     A   C
                     A   C
                     G - C
                     G - C
                     G + T          C C
                    A     C A C C C     A
      C T C        A      | | | | |     G
    C       T G C T       G T G G G     C
    G       +     +                 T T
    G       G A C G
      T G G        G     TTGGGGCAGCGAGCCTGTCCCGG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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