The detailed information of tRNA gene sequence


Sequence ID>A171000340
Genome IDCP001014
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum neutrophilum V24Sta [CP001014]
Start position on genome 1131793
End posion on genome 1131696
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
cgcggcgcga
tRNA gene sequence 
GCCCCGGTAGTATAGCCCGGACTAGTATATGGCCGTGTGCCAGCTAAAGCGGGCCTGTCG
AGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCGCCA
Downstream region at tRNA end position 
gccctcctct
Secondary structure (Cloverleaf model)
>A171000340	Asp	GTC
                   a      GCCA gccctcctct
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    A C T A        A     AAGCGGGCCTGTCGAGCCCGTGAC
                    T - A
                    G + T
                    G - C
                    C - G
                    C   A
                  G       C
                  T       C
                    G T G
Intron
Comment/Decision
Genome/Seq. Info.-

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