The detailed information of tRNA gene sequence


Sequence ID>A171000458
Genome IDCP001365
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalorubrum lacusprofundi ATCC 49239 [CP001365, CP001366]
Start position on genome 1672485
End posion on genome 1672399
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
gtccgggtgC
tRNA gene sequence 
GGTGGGATGGCAGAGCGGCCTATTGCGCCGGTCTTGAAAACCGGTAGCCTCACGGCTTCC
TGGGTTCGAATCCCAGTCCCACCGTCa
Downstream region at tRNA end position 
gcgcgcggcg
Secondary structure (Cloverleaf model)
>A171000458	Ser	TGA
                   C      GTCa gcgcgcggcg
                     G - C
                     G - C
                     T - A
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G A C C C     A
      C G A        G      | | | | |     G
    G       G A C G       C T G G G     C
    G       + | | |                 T T
    C       T T G C
      C T A        G     TAGCCTCACGGCTTC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.-

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