The detailed information of tRNA gene sequence


Sequence ID>A171000480
Genome IDCP001398
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
Start position on genome 1012636
End posion on genome 1012722
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
tcctttatgc
tRNA gene sequence 
GCCGGGGTAGCCTAGCCTGGGAAGGCGCGGGCCTGGAGAGTCCGTGGGCGTTAGCCCGCC
AGGGTTCAAATCCCTGCCCCGGCGCCA
Downstream region at tRNA end position 
aactccttct
Secondary structure (Cloverleaf model)
>A171000480	Ser	GGA
                   c      GCCA aactccttct
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G T C C C     A
      C G A        A      | | | | |     A
    C       T C C G       C A G G G     C
    T       | | | |                 T T
    G       A G G C
      G G A        G     TGGGCGTTAGCCCGC
                    C - G
                    G - C
                    G - C
                    G + T
                    C - G
                  C       A
                  T       G
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.-

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