The detailed information of tRNA gene sequence


Sequence ID>A171000842
Genome IDCP001690
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalogeometricum borinquense DSM 11551 PR 3 [CP001690]
Start position on genome 1161614
End posion on genome 1161529
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
caaattgtgt
tRNA gene sequence 
GTTGCGGTAGCCAAGCCTGGCCCAAGGCGCTGGGTTGCTAACTCAGTGGCACCACGCCTC
CGGGGTTCGAATCCCCGCCGCAACGCtc
Downstream region at tRNA end position 
acccgacttt
Secondary structure (Cloverleaf model)
>A171000842	Ser	GCT
                   t      GCtc acccgacttt
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     G
  T         A C C G       C G G G G     C
  G           | | |                 T T
  G         A G G C
    C C C A        G     TGGCACCACGCCTC
                    C - G
                    T - A
                    G - C
                    G + T
                    G - C
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.-

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