The detailed information of tRNA gene sequence


Sequence ID>A171001166
Genome IDCP001868
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
Start position on genome 1876491
End posion on genome 1876576
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
cgaacgcagt
tRNA gene sequence 
GTTGCGGTAGCCAAGCCTGGCCCAAGGCGCTGGGTTGCTAACTCAGTGGCGTCAAGCCCC
CGGGGTTCGAATCCCCGCCGCAACGCtc
Downstream region at tRNA end position 
acaatacgac
Secondary structure (Cloverleaf model)
>A171001166	Ser	GCT
                   t      GCtc acaatacgac
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     G
  T         A C C G       C G G G G     C
  G           | | |                 T T
  G         A G G C
    C C C A        G     TGGCGTCAAGCCCC
                    C - G
                    T - A
                    G - C
                    G + T
                    G - C
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.-

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