The detailed information of tRNA gene sequence


Sequence ID>A171001192
Genome IDCP001868
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
Start position on genome 1415310
End posion on genome 1415236
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
aagttgtgta
tRNA gene sequence 
GGGCGCTTAGCTCAGTCTGGACAGAGTGCTTGGCTTCGGACCAAGTTGCCGTGGGTTCAA
ATCCTGCAGCGCCCAtga
Downstream region at tRNA end position 
ttcttccgcg
Secondary structure (Cloverleaf model)
>A171001192	Arg	TCG
                   a      Atga ttcttccgcg
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     C - G
                     T - A          T A
                    T     C G T C C     A
    C T G A        A      | + + | |     A
  T         C T C G       G T G G G     C
  G         | | | +                 T T
  G         G A G T
    A C A          G     TTGCC
                    C - G
                    T - A
                    T - A
                    G - C
                    G - C
                  C       A
                  T       G
                    T C G
Intron
Comment/Decision
Genome/Seq. Info.-

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