The detailed information of tRNA gene sequence


Sequence ID>A171004133
Genome IDCP007055
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalostagnicola larsenii XH-48 [CP007055]
Start position on genome 1140060
End posion on genome 1140141
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
agggagacga
tRNA gene sequence 
GGTGGGGTGGCAGAGCGGCCTATTGCGCCTGCCTTGAAAGCAGGTGGCGTCAGCCTCTTG
GGTTCAAATCCCAACCCCACCGttg
Downstream region at tRNA end position 
ctgtcgcaaa
Secondary structure (Cloverleaf model)
>A171004133	Ser	TGA
                   a      Gttg ctgtcgcaaa
                     G - C
                     G - C
                     T - A
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     A A C C C     A
      C G A        G      | | | | |     A
    G       G A C G       T T G G G     C
    G       + | | |                 T T
    C       T T G C
      C T A        G     TGGCGTCAGCCTC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.-

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