The detailed information of tRNA gene sequence


Sequence ID>A171005268
Genome IDCP009516
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
Start position on genome 3551133
End posion on genome 3551056
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
caatcaaaac
tRNA gene sequence 
GCTCCGGTAGTGTAGTCCGGCCAATCATTCCGGCCTTTCGAGCCGAAGACTCGGGTTCGA
ATCCCGGCCGGAGCACCA
Downstream region at tRNA end position 
aacttttttt
Secondary structure (Cloverleaf model)
>A171005268	Glu	TTC
                   c      ACCA aacttttttt
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C T G A        A      + | | | |     G
  C         T G T G       T C G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        T     AGAC
                    C   A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
Intron
Comment/Decision
Genome/Seq. Info.-

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