The detailed information of tRNA gene sequence


Sequence ID>A171005579
Genome IDCP009528
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri MS [CP009528]
Start position on genome 3787543
End posion on genome 3787627
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
aaaacaaaat
tRNA gene sequence 
GCCCAGGTAGTCTAGTGGTAAGGCGACGGTCTCGAAAACCGTTTCTTCTTTGGGAGAGCG
CAGGTTCAAATCCTGCCCTGGGCGCta
Downstream region at tRNA end position 
atctttgagt
Secondary structure (Cloverleaf model)
>A171005579	Ser	CGA
                   t      GCta atctttgagt
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T
                     G - C
                     G - C          T A
                    T     C G T C C     A
        G A        A      | | | | |     A
      T     T C T G       G C A G G     C
      G     | | + |                 T T
      G     A G G C
        T A        G     TTCTTCTTTGGGAGAGC
                    A - T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C G A
Intron
Comment/Decision
Genome/Seq. Info.-

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