The detailed information of tRNA gene sequence


Sequence ID>A17A000034
Genome IDAP012489
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum camini SY1 = JCM 12091 [AP012489]
Start position on genome 375659
End posion on genome 375854
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
tgtgaagcgg
tRNA gene sequence 
GCCGCGGTAGTATAGCCTGGACTAGTATGCGGGCCTGTCAAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGCGGCGCCA
Downstream region at tRNA end position 
ataatcctcg
Secondary structure (Cloverleaf model)
>A17A000034	Asp	GTC
                   g      GCCA ataatcctcg
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    A C T A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    G T C
intron: position=38, length=118 (in A-loop)
AGGGCCCGCCTCCGCCCCTCTTCCTCCGGCACGCGCCTTAGAGGATAAACGGGTGGGCAAACGTTTTTAA
CCCCGACGAAATTTATACTCTTCCCGGGGCGGAGGCGGGCCTGCGGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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