The detailed information of tRNA gene sequence


Sequence ID>A17A000042
Genome IDCP000852
Search identical group
Phylum/ClassThermoproteota
SpeciesCaldivirga maquilingensis IC-167 [CP000852]
Start position on genome 1320742
End posion on genome 1320651
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
caataggaag
tRNA gene sequence 
GGGCCCGTAGTCTAGCCTGGTTAGGATGTCCGCCTTGAAAGCGGGAGATCCCGGGTTCAA
GTCCCGGCGGGCCCACta
Downstream region at tRNA end position 
gaataaacta
Secondary structure (Cloverleaf model)
>A17A000042	Ser	TGA
                   g      ACta gaataaacta
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T T A          G     AGATC
                    T + G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    T*G A
intron: position=35, length=16 (in A-loop)
ACGGGCATAACGCCAA
Intron
Comment/Decision
Genome/Seq. Info.-

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