The detailed information of tRNA gene sequence


Sequence ID>A17A000048
Genome IDCP000866
Search identical group
Phylum/ClassNitrososphaerota
SpeciesNitrosopumilus maritimus SCM1 [CP000866]
Start position on genome 366393
End posion on genome 366493
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
caagacttgt
tRNA gene sequence 
GCCGGGGTCGCCTAGCCTGGTAGGGCGCGCGCCTGGAAAGCGCGTTCTCGCAAGGGAACG
GGAGTTCAAATCTCCCTCCCGGCGCCA
Downstream region at tRNA end position 
ttattttcta
Secondary structure (Cloverleaf model)
>A17A000048	Ser	GGA
                   t      GCCA ttattttcta
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T          T A
                    T     C C C T C     A
      C G A        C      | | | | |     A
    C       T C C G       G G G A G     C
    T       + | | |                 T T
    G       G G G C
      G T A        G     TTCTCGCAAGGGAAC
                    C - G
                    G - C
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G G*A
intron: position=36, length=14 (in A-loop)
AAATTGTTAACCAT
Intron
Comment/Decision
Genome/Seq. Info.-

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