The detailed information of tRNA gene sequence


Sequence ID>A17A000053
Genome IDCP000867
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000867]
Start position on genome 934770
End posion on genome 934934
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
atgtgtaatg
tRNA gene sequence 
GGGAGTATGGTGTAGTCTGGTCTATCATCGGGGACTCCAAATCCCTGGACCTGGGTTCAA
ATCCCAGTACTTCCACtt
Downstream region at tRNA end position 
tttttctttt
Secondary structure (Cloverleaf model)
>A17A000053	Trp	CCA
                   g      ACtt tttttctttt
                     G - C
                     G - C
                     G + T
                     A - T
                     G - C
                     T - A
                     A - T          T A
                    T     G A C C C     A
    C T G A        G      | | | | |     A
  T         T G T G       C T G G G     C
  G           | | +                 T T
  G         T C A T
    T C T A        C     GGAC
                    G + T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C C*A
intron: position=36, length=89 (in A-loop)
AAGTGCCTATATGGCCTTCTTAAGAATCCAAGGATTTTTAAGGCGCACAGACACAAGTTTGTTGCGTGGA
CTAAAGCCCGATGCAGGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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