The detailed information of tRNA gene sequence


Sequence ID>A17A000078
Genome IDCP001014
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum neutrophilum V24Sta [CP001014]
Start position on genome 1441482
End posion on genome 1441590
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
tctagctcac
tRNA gene sequence 
GCGGCGGTAGTCTAGCCTGGTTTGGACGACGGGCTGCCAAGCCGTTGATCCCGGGTTCAA
ATCCCGGCCGCCGCACCA
Downstream region at tRNA end position 
ttaatctttt
Secondary structure (Cloverleaf model)
>A17A000078	Gly	GCC
                   c      ACCA ttaatctttt
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    T T T          G     TGATC
                    A - T
                    C - G
                    G - C
                    G - C
                    G   G
                  C*      A
                  T       A
                    G C C
intron: position=33, length=31 (in A-loop)
GGTCCCGTCGCCCCGGAGTAGGATGGCGGCC
Intron
Comment/Decision
Genome/Seq. Info.-

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