The detailed information of tRNA gene sequence


Sequence ID>A17A000253
Genome IDCP001719
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter ruminantium M1 [CP001719]
Start position on genome 2583770
End posion on genome 2583615
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
aatctcatta
tRNA gene sequence 
GGGGTTATGGTGTAACCTGGCATCATCTGGGACTCCAAATCCCAGGATCGGGGTTCAAAT
CCCTGTGACCCCAtct
Downstream region at tRNA end position 
tttctttttt
Secondary structure (Cloverleaf model)
>A17A000253	Trp	CCA
                   a      Atct tttctttttt
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     T + G
                     A - T          T A
                    T     G T C C C     A
      C A A        G      | + | | |     A
    C       T G T G       C G G G G     C
    T         | | +                 T T
    G       T C A T
      G C A        C     GGAT
                    T - A
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C C*A
intron: position=36, length=83 (in A-loop)
AGTTGTCTTTGAAGAAATACGCGTAGTCTGATGATCAGTATAAATTGGTTATGTGATGACCAATTGGAGT
ACTGAGGCAAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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