The detailed information of tRNA gene sequence


Sequence ID>A17A000346
Genome IDCP001939
Search identical group
Phylum/ClassThermoproteota
SpeciesThermosphaera aggregans DSM 11486 [CP001939]
Start position on genome 116985
End posion on genome 116880
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
atgtaggata
tRNA gene sequence 
GGGGCCGTAGTCTAGCCTGGCTAGGATGCCGGCCTGGAGCGCCGGTGATCCCGGGTTCAA
ATCCCGGCGGCCCCAttg
Downstream region at tRNA end position 
acgcctgcta
Secondary structure (Cloverleaf model)
>A17A000346	Ser	GGA
                   a      Attg acgcctgcta
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    C T A          G     TGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       G
                    G*G A
intron: position=35, length=31 (in A-loop)
GGGTGATTACCCCGCTGGCCAGGTAAGCCCG
Intron
Comment/Decision
Genome/Seq. Info.-

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