The detailed information of tRNA gene sequence


Sequence ID>A17A000428
Genome IDCP002051
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus hellenicus DSM 12710 [CP002051]
Start position on genome 1279844
End posion on genome 1279736
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
atgatattgt
tRNA gene sequence 
GGGGCCGTAGTCTAGCTTGGCTAGGATGCGGGGCTTGGGCCCCCGTGACCCGGGGTTCAA
ATCCCCGCGGCCCCACtt
Downstream region at tRNA end position 
tttaattatt
Secondary structure (Cloverleaf model)
>A17A000428	Pro	TGG
                   t      ACtt tttaattatt
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    T C G A        A      | | | | |     A
  T         T C T G       C G G G G     C
  G         + | | +                 T T
  G         G G A T
    C T A          G     TGACC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C*      C
                  T       G
                    T G G
intron: position=33, length=33 (in A-loop)
ACACTAGGCTCCAAATAGGACCTAGTGCCCGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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