The detailed information of tRNA gene sequence


Sequence ID>A17A000460
Genome IDCP002098
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnisphaera aggregans DSM 17230 [CP002098]
Start position on genome 62218
End posion on genome 62322
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
aaatattgga
tRNA gene sequence 
GCCGGGGTGGCCGAGAGGTCTAAGGCGGCGGGCTGCAGACCCGTTAATTCCCGGGTTCGA
ATCCCGGCCCCGGCTCta
Downstream region at tRNA end position 
agtttctaat
Secondary structure (Cloverleaf model)
>A17A000460	Cys	GCA
                   a      TCta agtttctaat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
      A G A        G      | | | | |     G
    G       G C C G       C C G G G     C
    G         | | |                 T T
    T       A G G C
      C T A        G     TAATTC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    G C*A
intron: position=36, length=29 (in A-loop)
AGTGGTTTCCGGCTAATATCCGCTCGTTG
Intron
Comment/Decision
Genome/Seq. Info.-

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