The detailed information of tRNA gene sequence


Sequence ID>A17A000540
Genome IDCP002535
Search identical group
Phylum/ClassThermoproteota
SpeciesAcidianus hospitalis W1 [CP002535]
Start position on genome 1125428
End posion on genome 1125331
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
aactataaat
tRNA gene sequence 
GGGGCCGTAGTCTAGCCAGGACTAGGATGCCAGCCTGGAACGCTGGTGGTCCCGGGTTCA
AATCCCGGCGGCCCCACgt
Downstream region at tRNA end position 
taaatacaaa
Secondary structure (Cloverleaf model)
>A17A000540	Ser	GGA
                   t      ACgt taaatacaaa
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    A C T A        G     TGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       C
                  T       A
                    G G*A
intron: position=36, length=21 (in A-loop)
GGATAGATCCCTAACCACCAG
Intron
Comment/Decision
Genome/Seq. Info.-

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