The detailed information of tRNA gene sequence


Sequence ID>A17A000806
Genome IDCP003316
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum oguniense TE7 [CP003316]
Start position on genome 1134513
End posion on genome 1134423
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
catgtagatg
tRNA gene sequence 
GCGGCGGTAGTCTAGCCTGGTTTAGGATGGCGGCCTTGAAAGCCGTTGATCCCGGGTTCG
AATCCCGGCCGCCGCAtgt
Downstream region at tRNA end position 
ttttatccat
Secondary structure (Cloverleaf model)
>A17A000806	Ser	TGA
                   g      Atgt ttttatccat
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     G
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T T T A        G     TGATC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T*G A
intron: position=35, length=15 (in A-loop)
CCACGCGACTGCGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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