The detailed information of tRNA gene sequence


Sequence ID>A17A000929
Genome IDCP003423
Search identical group
Phylum/ClassThermoproteota
SpeciesFervidicoccus fontis Kam940 [CP003423]
Start position on genome 117291
End posion on genome 117190
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
gagtgtctgg
tRNA gene sequence 
GGGGCCGTCGTCTAGCTTGGTAGGATGCCAGCCTGGAACGCTGGTGGTCCCGGGTTCAAA
TCCCGGCGGCCCCAtgc
Downstream region at tRNA end position 
ttgcttatct
Secondary structure (Cloverleaf model)
>A17A000929	Ser	GGA
                   g      Atgc ttgcttatct
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        C      | | | | |     A
    T       T C T G       C C G G G     C
    T       + | | +                 T T
    G       G G A T
      G T A        G     TGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       C
                  T       A
                    G*G A
intron: position=35, length=28 (in A-loop)
GGGAGGAACCCCGATATGACAAAACCTG
Intron
Comment/Decision
Genome/Seq. Info.-

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