The detailed information of tRNA gene sequence


Sequence ID>A17A000956
Genome IDCP003842
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrosopumilus koreensis AR1 [CP003842]
Start position on genome 453933
End posion on genome 454034
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
cattctcatt
tRNA gene sequence 
GCAGAGATATCGAAGCCCGGTCAACCGAGAGGGACTCGAAATCCCTTCTTTTAGGAGTTC
GTGGGTTCAAATCCCACTCTCTGCACta
Downstream region at tRNA end position 
atttaattca
Secondary structure (Cloverleaf model)
>A17A000956	Ser	CGA
                   t      ACta atttaattca
                     G - C
                     C - G
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C A C C C     A
    C C G A        A      | | | | |     A
  C         A G C T       G T G G G     C
  G           | | |                 T T
  G         C C G A
    T C A A        G     TCTTTTAGGAGTTC
                    A - T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C*G A
intron: position=35, length=16 (in A-loop)
AAGATCATCCAAATAG
Intron
Comment/Decision
Genome/Seq. Info.-

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