The detailed information of tRNA gene sequence


Sequence ID>A17A001010
Genome IDCP004050
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter sp. AbM4 [CP004050]
Start position on genome 1850490
End posion on genome 1850333
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
tttttcatat
tRNA gene sequence 
GGGGTTATAGTGTAACCTGGCATCATCTGGGACTCCAAATCCTAGGATCGGGGTTCAAAT
CCCTGTGACCCCACtt
Downstream region at tRNA end position 
ttatataaaa
Secondary structure (Cloverleaf model)
>A17A001010	Trp	CCA
                   t      ACtt ttatataaaa
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     T + G
                     A - T          T A
                    T     G T C C C     A
      C A A        A      | + | | |     A
    C       T G T G       C G G G G     C
    T         | | +                 T T
    G       T C A T
      G C A        C     GGAT
                    T - A
                    G + T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C C*A
intron: position=36, length=84 (in A-loop)
AGTTGTCTTTGAAGAAAATTAACGCGTAGTCTGACAGTATTAATTGATACAGAATGATGATCAATTGGAG
TACTGAGACAAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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