The detailed information of tRNA gene sequence


Sequence ID>A17A001018
Genome IDCP005934
Search identical group
Phylum/ClassUnclassified
SpeciesCandidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
Start position on genome 356655
End posion on genome 356825
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gctgaaccct
tRNA gene sequence 
GGGGGTATGGGGTAACACGGCATCCTCGCGGGCTCCAAACCCGCTGATCTGGGTTCAAAT
CCCAGTGCCCCCACtt
Downstream region at tRNA end position 
aacgcatcaa
Secondary structure (Cloverleaf model)
>A17A001018	Trp	CCA
                   t      ACtt aacgcatcaa
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     T + G
                     A - T          T A
                    T     G A C C C     A
      C A A        G      | | | | |     A
    A       T G G G       C T G G G     C
    C         | | +                 T T
    G       T C C T
      G C A        C     TGAT
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C C*A
intron: position=36, length=97 (in A-loop)
AGTTATCGAGAATGACTGCGAACGGGTTTGCTGACCGGTGATGACTAACTGGAGCGCTGACTCGTTAATT
CGCATGGGGTCGCTCCCCATGTGGTGG
Intron
Comment/Decision
Genome/Seq. Info.-

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