The detailed information of tRNA gene sequence


Sequence ID>A17A001176
Genome IDCP007174
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrososphaera evergladensis SR1 [CP007174]
Start position on genome 1176144
End posion on genome 1176234
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
ccggccggtt
tRNA gene sequence 
GGTGGGGTGGCAGAGCGGCCATGCGTTCGCCTGCAGCGCGAATCTATAGGGGTTCGAATC
CCCTCCCCACCTCtt
Downstream region at tRNA end position 
tagcacaaga
Secondary structure (Cloverleaf model)
>A17A001176	Cys	GCA
                   t      TCtt tagcacaaga
                     G - C
                     G - C
                     T - A
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T C C C C     A
        G A        G      | | | | |     G
      C     G A C G       A G G G G     C
      G       | | |                 T T
      G     A T G C
        C C        G     TCTAT
                    T - A
                    T - A
                    C - G
                    G - C
                    C - G
                  C       C *
                  T       G
                    G C A
intron: position=39, length=18 (in A-loop)
ATCGTGCAAATGCAGCCA
Intron
Comment/Decision
Genome/Seq. Info.-

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