The detailed information of tRNA gene sequence


Sequence ID>A17A001214
Genome IDCP009149
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus bathoardescens JH146 [CP009149]
Start position on genome 478014
End posion on genome 477904
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
tcgttgatgc
tRNA gene sequence 
GGGGGTGTGGTGTAGCCAGGTCTATCATCGGGGACTCCAAATCCCTGGACCTGGGTTCAA
ATCCCAGCACCCCCACCA
Downstream region at tRNA end position 
ttttttcgtt
Secondary structure (Cloverleaf model)
>A17A001214	Trp	CCA
                   c      ACCA ttttttcgtt
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C          T A
                    T     G A C C C     A
    C C G A        G      | | | | |     A
  A         T G T G       C T G G G     C
  G           | | +                 T T
  G         T C A T
    T C T A        C     GGAC
                    G + T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C C*A
intron: position=36, length=33 (in A-loop)
AGTTGCCTATAGGGCGCTGGACCATGGCAGGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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