The detailed information of tRNA gene sequence


Sequence ID>A17A001301
Genome IDCP010070
Search identical group
Phylum/ClassUnclassified
SpeciesCandidatus Methanoplasma termitum MpT1 [CP010070]
Start position on genome 854774
End posion on genome 854604
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gatcaactaa
tRNA gene sequence 
GGGAGTATAGGCTAACCTGGCAGACTGGCGGGCTCCAAACCCGCTGACGGGGGTTCAAAT
CCCTCTACTCCCACCt
Downstream region at tRNA end position 
tgcgtaacta
Secondary structure (Cloverleaf model)
>A17A001301	Trp	CCA
                   a      ACCt tgcgtaacta
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C
                     T - A
                     A - T          T A
                    T     C T C C C     A
      C A A        A      | + | | |     A
    C       T C G G       G G G G G     C
    T       +   | +                 T T
    G       G A C T
      G C A        G     TGAC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C C*A
intron: position=36, length=96 (in A-loop)
AGTTATCGAGCGTGATTGAAAAGAGCTTGCTGACAGTTGATGAATAACTGGAGCGATGACTCATAATTTC
GCGGAGGGTAGCTCCCTCCGTGGTGG
Intron
Comment/Decision
Genome/Seq. Info.-

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