The detailed information of tRNA gene sequence


Sequence ID>A17A001421
Genome IDCP012158
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum sp. WP30 [CP012158]
Start position on genome 1417968
End posion on genome 1417873
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
accagtttcg
tRNA gene sequence 
GGGCCCGTGGCTTAGCCCGGTTAGAGCGCCCGGCTGGAAACCGGGAGGTCCCGGGTTCAA
ATCCCGGCGGGCCCACCA
Downstream region at tRNA end position 
gacccacttc
Secondary structure (Cloverleaf model)
>A17A001421	Ser	GGA
                   g      ACCA gacccacttc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  C         T T C G       C C G G G     C
  G         + | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G*G A
intron: position=35, length=18 (in A-loop)
ATATTTAGTCTGTAATCA
Intron
Comment/Decision
Genome/Seq. Info.-

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