The detailed information of tRNA gene sequence


Sequence ID>A17A001471
Genome IDCP012850
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrosocosmicus oleophilus MY3 [CP012850]
Start position on genome 1721449
End posion on genome 1721344
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
tcaattagtg
tRNA gene sequence 
GCCTTCGTAGTATAGCCTGGTTAGTATAGGCGGCTGGAAACCGCTTGAGGAGGGTTCAAA
TCCCTCCGAAGGCCCCt
Downstream region at tRNA end position 
caggtctata
Secondary structure (Cloverleaf model)
>A17A001471	Ser	GGA
                   g      CCCt caggtctata
                     G - C
                     C - G
                     C - G
                     T - A
                     T - A
                     C - G
                     G - C          T A
                    T     C T C C C     A
    C C G A        A      | | | | |     A
  T         T A T G       G A G G G     C
  G         + | | +                 T T
  G         G T A T
    T T A          A     TGAG
                    G + T
                    G - C
                    C - G
                    G - C
                    G - C
                  C       A
                  T*      A
                    G G A
intron: position=34, length=30 (in A-loop)
GTGGATTTCACTTAGTTTCTTAAAGAATAC
Intron
Comment/Decision
Genome/Seq. Info.-

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