The detailed information of tRNA gene sequence


Sequence ID>A17A001481
Genome IDCP012986
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNanohaloarchaea archaeon SG9 [CP012986]
Start position on genome 668263
End posion on genome 668602
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
atttagaccc
tRNA gene sequence 
GGGGGCATGGTGTAACCTGGGATCATATCGGACTCCAGATCCGACGATCAGGGTTCAAAT
CCCTGTGCCCCCAtca
Downstream region at tRNA end position 
tccatattgt
Secondary structure (Cloverleaf model)
>A17A001481	Trp	CCA
                   c      Atca tccatattgt
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     A - T          T A
                    T     G T C C C     A
      C A A        G      | | | | |     A
    C       T G T G       C A G G G     C
    T         | | +                 T T
    G       T C A T
      G G A        A     CGAT
                    T - A
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C C A
intron: position=38, length=267 (in A-loop)
GAATTGGTTACGCTCGATTCAGACGCAATGAGGCATTTTCAATGCCTCTCGGGAGTTCCACATCCTGAAA
GCGATTCCATAAGGAATGGCTTATTGCGTGCGATTAGCGTCGCAGGCTTCTAAAGGAAGACCTGCTTTAG
CACACTTTCCAGATGGAAAGGTGCATTAACAATCGCTGGAGTAATGAGAAGATTGAGGCCTATCGGAGCC
TGGTCTTCGATGATTACAGCCCGGATACGCGCCTATTTATTGGCGGCTATTGGAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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