The detailed information of tRNA gene sequence


Sequence ID>A17A001484
Genome IDCP012986
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNanohaloarchaea archaeon SG9 [CP012986]
Start position on genome 889244
End posion on genome 889118
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
ttacttacaG
tRNA gene sequence 
GCCTCGATAGCTCAGCCTGGCTAGAGCAGCTCCCTTGAAAGGAGCAGGTCGAGGGTTCAA
ATCCCTCTCGGGGCTACC
Downstream region at tRNA end position 
tgaatactgt
Secondary structure (Cloverleaf model)
>A17A001484	Ser	TGA
                   G      TACC tgaatactgt
                     G - C
                     C - G
                     C - G
                     T + G
                     C - G
                     G - C
                     A - T          T A
                    T     C T C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       G A G G G     C
  G         | | | |                 T T
  G         G A G C
    C T A          A     AGGTC
                    G - C
                    C - G
                    T - A
                    C - G
                    C - G
                  C       A
                  T       A
                    T G*A
intron: position=36, length=48 (in A-loop)
TACCGCATGGTTACCGCACCTTTCAACTGAAAGTGTGCTCAAAGCAAG
Intron
Comment/Decision
Genome/Seq. Info.-

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