The detailed information of tRNA gene sequence


Sequence ID>A17A001485
Genome IDCP012986
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNanohaloarchaea archaeon SG9 [CP012986]
Start position on genome 908064
End posion on genome 907904
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
catttaccaa
tRNA gene sequence 
GGACCGGTAGCTTAGCCAGGTTAGAGCGCCACGCTGATAACGTGGAGATCCCCAGTTCAA
ATCTGGGCCGGTCCAaac
Downstream region at tRNA end position 
cctatccaat
Secondary structure (Cloverleaf model)
>A17A001485	Ile	GAT
                   a      Aaac cctatccaat
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G G T C     A
    C C G A        A      | | | | |     A
  A         T T C G       C C C A G     C
  G         + | | |                 T T
  G         G A G C
    T T A          G     AGATC
                    C - G
                    C - G
                    A - T
                    C - G
                    G - C
                  C       A
                  T       A *
                    G A T
intron: position=38, length=86 (in A-loop)
AACACACCCTGCTTAGCCGGGTATCCAAACACGCCTTCTCTCCGAGAAGGATGCAAATAATCCGCATCAA
CGGAAAAAATTCAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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