The detailed information of tRNA gene sequence


Sequence ID>A17A001493
Genome IDCP013050
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus barophilus CH5 [CP013050]
Start position on genome 1832660
End posion on genome 1832521
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
tattgaacat
tRNA gene sequence 
GGGGGCGTGGTGTAGCCTGGTCCATCATCGCGGGCTCCAAACCCGCGGACCGGGGTTCAA
ATCCCCGCGCCCCCACCA
Downstream region at tRNA end position 
caattttaac
Secondary structure (Cloverleaf model)
>A17A001493	Trp	CCA
                   t      ACCA caattttaac
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        G      | | | | |     A
  T         T G T G       C G G G G     C
  G           | | +                 T T
  G         T C A T
    T C C A        C     GGAC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C C*A
intron: position=36, length=62 (in A-loop)
AGAGGTGTGAAGACAGGCGGGTTTGCTGATTGGGGATGAGCCTTTGGAGCTCTGACCCGGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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