The detailed information of tRNA gene sequence


Sequence ID>A178000001
Genome IDAM774415
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum R1 DSM 671 [AM774415]
Start position on genome 114945
End posion on genome 115053
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
catcgccagc
tRNA gene sequence 
GGGCCCTTAGCTTAGTCCGGTTCAAAGCCCCCGGCTCATAACCGGGTGAGCGGTGGTTCA
AATCCGCCAGGGCCCAtcc
Downstream region at tRNA end position 
atttcctcga
Secondary structure (Cloverleaf model)
>A178000001	Met	CAT
                   c      Atcc atttcctcga
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A          T A
                    T     C C G C C     A
    C T G A        A      | | + | |     A
  C         T T C G       G G T G G     C
  G         | | | |                 T T
  G         A A G C
    T T C A        C     TGAGC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=33 (in A-loop)
TCAGTGCCGTCGCATGCGGCGGCGCTGTGGGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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