The detailed information of tRNA gene sequence


Sequence ID>A178000004
Genome IDAP011532
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella paludicola SANAE [AP011532]
Start position on genome 2564950
End posion on genome 2565055
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
aaatcgtgat
tRNA gene sequence 
GTCGGAGTGGCCTAGTCTGGTTAGGGCGTCGGACTCATAATCCGGAGGTCGGGGGTTCGG
ATCCCCCCTCCGACACta
Downstream region at tRNA end position 
ctatttatcg
Secondary structure (Cloverleaf model)
>A178000004	Met	CAT
                   t      ACta ctatttatcg
                     G - C
                     T - A
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C          T A
                    T     C C C C C     G
    C T G A        G      | | | | |     G
  T         T C C G       G G G G G     C
  G         + | | |                 T T
  G         G G G C
    T T A          G     AGGTC
                    T + G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=30 (in A-loop)
GGGTATTGTAGTAATGCCATAACCTGAGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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