The detailed information of tRNA gene sequence


Sequence ID>A178000011
Genome IDAP012489
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum camini SY1 = JCM 12091 [AP012489]
Start position on genome 1331173
End posion on genome 1331078
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
actaactggg
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGTCTAAGGCGGCGGGCTGCAGACCCGTTAGTTCCCGGGTTCGA
ATCCCGGCCCCGGCTCCA
Downstream region at tRNA end position 
tagaactcat
Secondary structure (Cloverleaf model)
>A178000011	Cys	GCA
                   g      TCCA tagaactcat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     G
    G       G C C G       C C G G G     C
    G         | | |                 T T
    T       A G G C
      C T A        G     TAGTTC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    G C A
intron: position=38, length=18 (in A-loop)
AGGACCTCGCCCGTAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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