The detailed information of tRNA gene sequence


Sequence ID>A178000017
Genome IDCP000852
Search identical group
Phylum/ClassThermoproteota
SpeciesCaldivirga maquilingensis IC-167 [CP000852]
Start position on genome 2041359
End posion on genome 2041451
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
gtttgaggaa
tRNA gene sequence 
GGGCCCGTAGTCTAGCTTGGTTAGGATGCCCGCCTCACGCGCGGGAGATCCCGGGTTCGA
GTCCCGGCGGGCCCACtc
Downstream region at tRNA end position 
atcatagtgt
Secondary structure (Cloverleaf model)
>A178000017	Val	CAC
                   a      ACtc atcatagtgt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     G G C C C     A
    T C G A        A      | | | | |     G
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T T A          G     AGATC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       G *
                    C A C
intron: position=38, length=17 (in A-loop)
GGTGCTGCATCTGGGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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