The detailed information of tRNA gene sequence


Sequence ID>A178000029
Genome IDCP001365
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalorubrum lacusprofundi ATCC 49239 [CP001365, CP001366]
Start position on genome 1222533
End posion on genome 1222708
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gagatcacgc
tRNA gene sequence 
GGGGCTGTGGCCAAGCCAGGCATGGCGACTGACTCCAGATCAGTCGATCGGGGGTTCAAA
TCCCTCCGGCCCCACta
Downstream region at tRNA end position 
ccttgttcct
Secondary structure (Cloverleaf model)
>A178000029	Trp	CCA
                   c      ACta ccttgttcct
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     G - C          T A
                    T     C T C C C     A
      C G A        G      | + | | |     A
    C       A C C G       G G G G G     C
    A       | | | |                 T T
    G       T G G C
      G C A        G     CGATC
                    A - T
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       G *
                    C C A
intron: position=38, length=101 (in A-loop)
AGGCTTGCGCCCGGGACGACACTCCAGACTGATATACCGAGCGGCCGACTGATCATCGGTCGTGTTGACG
ACCCTCTGGAGTTCCGAGGCGCGCCGGAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK