The detailed information of tRNA gene sequence


Sequence ID>A178000030
Genome IDCP001365
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalorubrum lacusprofundi ATCC 49239 [CP001365, CP001366]
Start position on genome 1566519
End posion on genome 1566630
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
ccgaaattgc
tRNA gene sequence 
GCTCGGTTGGTGTAGTCCGGCCAATCATGTTGGCCTTTCGAGCCGACGACCAGGGTTCAA
ATCCCTGACCGAGCACtt
Downstream region at tRNA end position 
ctcacttcta
Secondary structure (Cloverleaf model)
>A178000030	Glu	TTC
                   c      ACtt ctcacttcta
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C
                     T - A          T A
                    T     G T C C C     A
    C T G A        G      | | | | |     A
  C         T G T G       C A G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        G     CGAC
                    T - A
                    T + G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    T T C
intron: position=38, length=36 (in A-loop)
ACAAACGCGGCGCGACGACGCGCCGGTTTGGAAGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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